PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1787630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 133aa    MW: 15179.5 Da    PI: 4.336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1787630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY345.8e-11108129122
                      ---SS-EEEEEEE--TT-SS-E CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                      ldDg++WrKYG+K+vk+s++pr
  Lj1g3v1787630.1 108 LDDGFKWRKYGKKMVKNSPNPR 129
                      59*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-1294130IPR003657WRKY domain
SuperFamilySSF1182902.75E-9101130IPR003657WRKY domain
PROSITE profilePS5081112.909103129IPR003657WRKY domain
PfamPF031061.3E-6109130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTDKNPVSLP PDSPESDFIN QWPQELSEYL KLDDDNQWPD DDDHPDHSFA NSWHVLNQDN  60
QTNQVGDFGG SSSNVEGSST SKSDVNIEDE KAVKEKVSFK TKSEVEILDD GFKWRKYGKK  120
MVKNSPNPRY ICL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1787630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103621e-137AP010362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT12P09, TM1929, complete sequence.
GenBankAP0103631e-137AP010363.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT61C17, TM2005, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522275.16e-40probable WRKY transcription factor 50
RefseqXP_027190450.16e-40probable WRKY transcription factor 50 isoform X2
SwissprotQ8VWQ57e-17WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A3Q7YFG51e-38A0A3Q7YFG5_CICAR; probable WRKY transcription factor 50 isoform X2
TrEMBLI1JTZ81e-38I1JTZ8_SOYBN; Uncharacterized protein
TrEMBLI3SPD21e-38I3SPD2_LOTJA; Uncharacterized protein
STRINGGLYMA04G05700.12e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-17WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]