PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1452960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 492aa    MW: 53701.5 Da    PI: 6.3312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1452960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11306348754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Lj1g3v1452960.1 306 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 348
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16302371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9305348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16306361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12306352No hitNo description
CDDcd048731.19E-7421481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MLSRINNGSW MDEREDENSA SASWARNSKP NSTGFVENRD DLGSLCALKP MLEVDEEWFM  60
MRDMAFDNVL LQTVDSHSAS SCSPSSSVFN TLEPSSSQYF LPPNPKPPTL SSLLNPFDMG  120
FLDPQGSTTS SLLGSFVELN NSKPQLTLPN FTSGTTMTMP HLPQSNTSFG GFQNLEEASG  180
KTPFLNRSKI LRPLESLPPS GAQPTLFQKR AALRKNMGSG SSPVQSKGEI GEGSDKKRKL  240
SIGDEYEDAS FDGSGLNYDS DDLIESKMEE NSAKNGGASN GNNSTVTGGG VDQKGKKKGL  300
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  360
STPNSGSCSL TPVSSFHPLT PTPTALPGRI KEELCPSSLP SPNGQPARVE VRLREGRAVN  420
IHMFCARKPG LLLSTMRALD NLGLDIQQAV ISCFNGFAMD VFRAEQCNEG QEVHPEHIKA  480
ILLESAGFHG LI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295313KKKGLPAKNLMAERRRRKK
2307314ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.201020.0floral bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501748.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-133ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2RHL50.0A0A0B2RHL5_GLYSO; Transcription factor ICE1
STRINGGLYMA04G37750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-133bHLH family protein