PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0465620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 524aa    MW: 57176.2 Da    PI: 7.0236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0465620.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-30245304159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Lj1g3v0465620.1 245 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILITTYEGNHNHP 304
                      58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31230306IPR003657WRKY domain
SuperFamilySSF1182909.29E-27238306IPR003657WRKY domain
PROSITE profilePS5081128.357240306IPR003657WRKY domain
SMARTSM007748.8E-36245305IPR003657WRKY domain
PfamPF031064.0E-26246304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEFGSGRSGH DEGEGAKVER RSQSSGGGGG GEDHREQETV VTQEPPMTDI ARSMEGAGPN  60
TSSPKKEEVD ELENTKAEMG GVIQENQRLK TCLNRILNDY RTLQMQFHNI AEQDTKTSSD  120
KANNNNHNQD KMMEESELVS LSLGRLPSNP RNNEKAKVIS RPLKEEENRE GLALGLDCKF  180
ETSKSGSTDN SSELPLKEDV GETWKPSKVD KTSITIPGED EVSQQNNPAK KTRVCVRARC  240
DTLTMNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPSCPVR KQVQRCAQDM SILITTYEGN  300
HNHPLPLSAT AMASTTSAAA SMLLSGSSTS HAGSTTADLH GMNFCLSDGS KSKQFYMSHP  360
ALSPSPSHPT ITLDLTTSNN NLPLSSLPFG RFTSNFNNPP RYPSSTSLNF SNSESNAMSW  420
SNGFLSYNTS LPYNNNNILS NPGRQQQQQP MENNILNSYM QRNNNNVPTD TIAEATKAIT  480
ADPTFQSALA AALTSIIGST GSSTTTQGLN QNNVGEILGK KRKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21232306174WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0465620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049500.0AP004950.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT42E10, TM0123, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528183.10.0probable WRKY transcription factor 61
RefseqXP_028237211.10.0probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-117WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A371I8J30.0A0A371I8J3_MUCPR; Putative WRKY transcription factor 72 (Fragment)
STRINGGLYMA06G20300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-68WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]