PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0340829.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 378aa    MW: 41937.5 Da    PI: 9.0583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0340829.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31293351360
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYeg+Hnh+k
  Lj0g3v0340829.1 293 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLDEPSMLIVTYEGDHNHPK 351
                      99************************988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-16244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-33279351IPR003657WRKY domain
PROSITE profilePS5081129.746286352IPR003657WRKY domain
SuperFamilySSF1182906.28E-27289351IPR003657WRKY domain
SMARTSM007741.9E-37291351IPR003657WRKY domain
PfamPF031068.7E-27293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEDLSMVEAE MEEVEEANRA AVESCHRVIS MLSQPQDQVE YKNLMVETGE AVKKFKRVVS  60
LLSNGGVGHA RVRKLKKLPI PFSQSILKDN PNCKTNHNQS KTFEFPQIGF PDNSVQELGS  120
SVRSSICLGN GNPSLELSSN GKNPLVIAQQ PLSTHYNILQ QQQQLQRLSW QQLQMKQQAE  180
MMFRRKNGVI NLNFDNSSCT PSMSCTRSFV SSLSIDGSLA NMDGSAFQLA GAAHPSDQNS  240
EQHKRKCSAG GDEGSTKCGS SAKCHCSKKR KHRVKRSIKV PAVSNRIADI PPDDYSWRKY  300
GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCLDEPSMLI VTYEGDHNHP KLPSQCANAA  360
ELNQDQAPSF NLSKPLEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-202893531275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0340829.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365339.10.0probable WRKY transcription factor 21
SwissprotO043361e-118WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0B2RD390.0A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21
TrEMBLA0A0R0KWS70.0A0A0R0KWS7_SOYBN; Uncharacterized protein
STRINGGLYMA02G15920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-94WRKY DNA-binding protein 21