PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0338549.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 144aa    MW: 16381.3 Da    PI: 9.3272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0338549.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.65.7e-222272356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr+++ +g+++AeIrdps++g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Lj0g3v0338549.1 22 YRGVRRRP-WGKYAAEIRDPSKQG--TRLWLGTFDTAEEAARAYDRAAFNLRGH 72
                     9*******.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-382185IPR001471AP2/ERF domain
PROSITE profilePS5103224.6582179IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-242280IPR016177DNA-binding domain
PRINTSPR003674.9E-122233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-322280IPR001471AP2/ERF domain
PfamPF008471.3E-152272IPR001471AP2/ERF domain
CDDcd000186.53E-302279No hitNo description
PRINTSPR003674.9E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEDHHKGKHG KDQEKAREEV PYRGVRRRPW GKYAAEIRDP SKQGTRLWLG TFDTAEEAAR  60
AYDRAAFNLR GHLAILNFPS EYYSKIRGSP PYPPHLASSS SSSHAMASGS SPGAPQRHVF  120
EFECLDDKVL EELLESEEQK KKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-331812911114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0338549.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364607.14e-74ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-51ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A371E6D21e-71A0A371E6D2_MUCPR; Ethylene-responsive transcription factor ERF098 (Fragment)
STRINGGLYMA20G34560.13e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]