PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0298769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 357aa    MW: 39886.3 Da    PI: 5.6615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0298769.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29128189159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v+rs+ed +v+eitY+g+H+++
  Lj0g3v0298769.1 128 LDDGYSWRKYGQKDILGAIYPRGYYRCTHRnvqGCLATKQVQRSDEDSTVFEITYRGNHTCT 189
                      59***************************98999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.066123191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-28124190IPR003657WRKY domain
SuperFamilySSF1182901.23E-25127190IPR003657WRKY domain
SMARTSM007742.6E-40128190IPR003657WRKY domain
PfamPF031063.1E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDNMGDRKSL VHELLQGLEL ARQLQIFIHL PSTSNEAREV LIQRVISSFE KALQIVNRKG  60
TLGESSQQHS GVAIGVAESP QPFSSPCSED SDRDFRDQEQ SPSKKRNTFP RWTKKIRVTP  120
GMGVEGPLDD GYSWRKYGQK DILGAIYPRG YYRCTHRNVQ GCLATKQVQR SDEDSTVFEI  180
TYRGNHTCTM ASNVVVPTQN PPENQESNLN TNSQQQNVLK SLEQEPNLLL LNLRAGLRVQ  240
TENLDNPEYK SLAPFNFPST SNIKIENQIF QSCILESNSF AENFTSNSYM SPATATSGVN  300
NFTGYPNLAS SIDSQISDMV PAAASAANSP TVGLEFPFGQ FEFDGHNFTF DNQRFLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19114186674Disease resistance protein RRS1
5w3x_D4e-19114186674Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0298769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338921.11e-178probable WRKY transcription factor 53
TrEMBLA0A0B2SHC41e-167A0A0B2SHC4_GLYSO; Putative WRKY transcription factor 30
STRINGGLYMA04G41701.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-51WRKY family protein