PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0149769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARR-B
Protein Properties Length: 668aa    MW: 73295.1 Da    PI: 5.9935
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0149769.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.23.2e-27214267155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +pr++W+ eLH++F+ av++L G++kA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Lj0g3v0149769.1 214 RPRVVWSVELHQQFMAAVNNL-GIDKAVPKKILEIMNVPGLTRENVASHLQKYRL 267
                      59*******************.********************************8 PP

2Response_reg71.92.7e-24371451109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l+   y ev+ ++ +e al ll+ ++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  
  Lj0g3v0149769.1  37 VLVVDDDPTCLVILERMLRACLY-EVTKCKRAEVALSLLRGNKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKDVVMKGVTH 128
                      89*****************9999.***************777778**********************6654.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +e+l +
  Lj0g3v0149769.1 129 GACDYLIKPVRIEALKN 145
                      *************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.2E-16512663IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.0E-4034158No hitNo description
SuperFamilySSF521723.98E-3434154IPR011006CheY-like superfamily
SMARTSM004481.3E-2835147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.19336151IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2137145IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.95E-2638150No hitNo description
PROSITE profilePS512949.819211270IPR017930Myb domain
SuperFamilySSF466896.45E-19212271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28213272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23215267IPR006447Myb domain, plants
PfamPF002492.0E-6216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MNAKGPIMST PTSSSASKSS DTAAVTAADQ FPAGLRVLVV DDDPTCLVIL ERMLRACLYE  60
VTKCKRAEVA LSLLRGNKNG FDIVLSDVHM PDMDGFKLLE HIGLEMDLPV IMMSADDGKD  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKNDGKD PDQSGGGDEG DQQLKGSDDA  180
DYSSSANECK STKKRRDQED EDAEDRDDSS SLKRPRVVWS VELHQQFMAA VNNLGIDKAV  240
PKKILEIMNV PGLTRENVAS HLQKYRLYLR RVSGVSQPQN NLNSSFISPY ESAYNASSIN  300
GIDLQTISAH SLAKLQAGLG RSTAKVGVPM PLVEQKNLFS FENSKLRFGE GQLQHMSSNK  360
PMNLLHGIPT NMEPKQFAHW HQSTQSLGNL NMRFNASAAQ RNPFLMQMNH SQPRGQMLGE  420
NTGSHITRFP SSLVQPSGPN GISNGAIENG ITDTNNITPQ RSSLLSFPMN QTTDISASSF  480
PLRSTPGISN ITTKGMFHEE VTLGTKGSGG FFPSYDIFNE LHQKSHDWDP TNSGLTYDAS  540
QHTNPLQGSF DVLPSILGHQ DFSSAQQTAE NRDTTLIGKG MVSMGDSMNL GNLQNVGQHH  600
LNTSLIDNSA RVKAEKFPDP SSQNNLFLEQ YGQDDLLSEL LKQQEGIGVG PIENEFDFDG  660
YSMDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22210273164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.254680.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0149769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366964.10.0two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A445GTV50.0A0A445GTV5_GLYSO; Two-component response regulator
TrEMBLI1MGI90.0I1MGI9_SOYBN; Two-component response regulator
STRINGGLYMA15G15520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-170response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]