PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0146729.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 429aa    MW: 47259.2 Da    PI: 7.3386
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0146729.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30175234159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+
  Lj0g3v0146729.3 175 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 234
                      58**************************999****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31160236IPR003657WRKY domain
SuperFamilySSF1182902.09E-27169236IPR003657WRKY domain
PROSITE profilePS5081128.392170236IPR003657WRKY domain
SMARTSM007741.4E-36175235IPR003657WRKY domain
PfamPF031061.7E-26176234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEDHHNFLDS NSDEEISSKE QKLEAAKGDI GEAREESEKL KFLLATNHNH EESELVTLSL  60
GISSQGKPTS KDEKKDSNRT QKRENEDVDI GLALGLDVRF DPAPETEAAI SNFSQESSST  120
NEKGKEEEPA EMWPPSKVLK TMRTGDKSTE ANPQHAHQLK KTRVSIRARC DSPTMNDGCQ  180
WRKYGQKIAK GNPCPRAYYR CTVSPTCPVR KQVQRCAEDM SILITTYEGV HNHPLPLSAT  240
AMASTTCAAA SMLQCPSSFS SHSQQGLESK YSDIAHIINS SCADAYCYST TPNALNFSTC  300
QISRPNNQFH FPNSSISILN SHPTITLDLA AASSSTSSHS GKFSQIPKYS STNLNFSSGF  360
SPLQYSIPQS PWSSYSSGNY FKSEGTLAQN RNQGGYLHMS SYALRYSQQG NSVLFPPPPP  420
SKNISSNRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19162236174WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0146729.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617466.11e-155probable WRKY transcription factor 61
RefseqXP_028230555.11e-155probable WRKY transcription factor 61
SwissprotA0A3Q7GFB53e-75WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A445LYN11e-154A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBLI1J5L71e-154I1J5L7_SOYBN; Uncharacterized protein
STRINGGLYMA01G05050.11e-155(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-52WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]