PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0146729.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 257aa    MW: 28134.4 Da    PI: 9.0744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0146729.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30362159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+
  Lj0g3v0146729.2  3 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 62
                     58**************************999****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.128164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-30364IPR003657WRKY domain
SuperFamilySSF1182907.06E-27364IPR003657WRKY domain
SMARTSM007741.4E-36363IPR003657WRKY domain
PfamPF031067.6E-27462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQMNDGCQWR KYGQKIAKGN PCPRAYYRCT VSPTCPVRKQ VQRCAEDMSI LITTYEGVHN  60
HPLPLSATAM ASTTCAAASM LQCPSSFSSH SQQGLESKYS DIAHIINSSC ADAYCYSTTP  120
NALNFSTCQI SRPNNQFHFP NSSISILNSH PTITLDLAAA SSSTSSHSGK FSQIPKYSST  180
NLNFSSGFSP LQYSIPQSPW SSYSSGNYFK SEGTLAQNRN QGGYLHMSSY ALRYSQQGNS  240
VLFPPPPPSK NISSNRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-203641777Probable WRKY transcription factor 4
2lex_A5e-203641777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0146729.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617466.19e-92probable WRKY transcription factor 61
RefseqXP_028230555.19e-92probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-45WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A445LYN12e-90A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBLI1J5L72e-90I1J5L7_SOYBN; Uncharacterized protein
STRINGGLYMA01G05050.13e-91(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-40WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]