PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0134509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 87aa    MW: 9580.23 Da    PI: 8.9996
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0134509.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.84.9e-16267161
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l+++ pe+ r+ ++s +
  Lj0g3v0134509.1  2 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPGLFSII 67
                     6**********************************************************9988544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.41187IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-12266IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCSIR PCLQWIKSPE SQANATVFLA KFYGRAGLMN LVNSGPEHLR  60
PGLFSIIFSS PVSPTRIFYS CSCCTKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0134509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096601e-146AP009660.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT23D08, TM0220, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077976.13e-39LOB domain-containing protein 40
RefseqXP_012568012.13e-39LOB domain-containing protein 41
RefseqXP_026386660.13e-39LOB domain-containing protein 41-like
SwissprotQ9M8861e-38LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067KMA86e-38A0A067KMA8_JATCU; Uncharacterized protein
TrEMBLA0A0B2Q7W04e-38A0A0B2Q7W0_GLYSO; LOB domain-containing protein 41
TrEMBLA0A0B2QZ471e-38A0A0B2QZ47_GLYSO; LOB domain-containing protein 41
TrEMBLA0A1S3DX076e-38A0A1S3DX07_CICAR; LOB domain-containing protein 41
TrEMBLA0A200Q3F65e-38A0A200Q3F6_9MAGN; Uncharacterized protein
STRINGXP_007139150.12e-38(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-41LOB domain-containing protein 41