PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1735s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 267aa    MW: 28414.6 Da    PI: 4.8593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1735s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06141163123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cgk+Fs+   L  H+r H
  Kalax.1735s0002.1.p 141 HECGICGKVFSTGQALGGHMRAH 163
                          78*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-6138165No hitNo description
PfamPF139121.8E-11140164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4141163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554141163IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGRNASRGS PSNVSEDHKR DGEDSSDRRG NNQERSSSDS SRHGGERRLN VDEIVITMIT  60
LVAIATSGNV VVHDQSWMTA AIVQSESFIP PPPPPAPAPA PTRVINNNAN NDAIPPPEEG  120
CSSGQSPPNK KRKRAEHQEV HECGICGKVF STGQALGGHM RAHYPGHLSR TRHANSNVAI  180
ASSAASVAAP SSYSGATINN NNNNINSEVD AEVNDESTVV EHAASESDQA ASHPRLDIDL  240
NVKPAEMSEE PEEENLEEEG HHSYGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-08C2H2 family protein