PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1669s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 244aa    MW: 26907.9 Da    PI: 5.9774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1669s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004498120123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kalax.1669s0001.1.p  98 FSCNYCRRKFFSSQALGGHQNAH 120
                          89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-696126No hitNo description
PROSITE profilePS5015711.30298125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDLNRMAVMR NSDSEDDSEV NILVGSNLSI QGGYFECRDS IRDESSCLRN SHLNPEAVSL  60
NLTLHSSNTS TPLDNDGSDP GAELTTQPPQ VPRIQRLFSC NYCRRKFFSS QALGGHQNAH  120
KRERTMAKRA MKMGVFSHRY ASLVSLPIHG NAFRAMGLEA HALTHPTLEP QPPPRADENT  180
IRKFEHGGYF GVPFFPEDDA VELPWPGSFR SHDDSNNADF AAMAPPVSNS ASPIPDDDLT  240
LRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045479.14e-60Zinc finger protein 4
TrEMBLA0A061E8M65e-60A0A061E8M6_THECC; Zinc finger protein 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-36zinc finger protein 4