PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1484s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 308aa    MW: 32423.4 Da    PI: 6.7943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1484s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066991123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++Cgk+Fs++  L  H++ H
  Kalax.1484s0001.1.p 69 HVCKYCGKVFSTSQALGGHQNGH 91
                         79*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.48E-76596No hitNo description
PfamPF139121.3E-66992IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7596996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNKGKKDDED VDVNNNIATV TSLSLALVIA PQAAGGSSGA GGERMSSRHQ SEPENVVERS  60
NSGGGRKDHV CKYCGKVFST SQALGGHQNG HKKEREADRF RESLDKIMGR EPNASNRYHP  120
YLNFPPNNNS RLEGLNLGGG GFTSRQPLYQ LPHSALLASG QGQGAGVPMQ MRAPPPPVPR  180
FGGQGFAQRF GSWSEFVKRP NAASGEGSSS SRSGGGSSVV QRLSYLPGGI GFRPNAISSA  240
IVDPNVNPNC NKDSNLNPSS NANANPDAND NRNATGEADA NVPMVAADPG DGNEEDDERE  300
LDLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-10C2H2 family protein