PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1443s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 242aa    MW: 25996.9 Da    PI: 10.6281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1443s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.24.2e-3681602133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec 73 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++a  +i el+++                  +  s+s++
  Kalax.1443s0005.1.p   8 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDMQDRLGYDQPSKAVEWLIKAAADSIAELPSLtgpfpetarqlcdaklgfE--SSSAA 95 
                          689*************************************************************9999888888888888552..33223 PP

                  TCP  74 ....eaesssssasnsssgkaaksaakskksqksaasalnlak.....esrakarararertrekmrik 133
                              ea++s+ +   ++  + + s+  s+ s++s+ s l+l +     ++r +ar+rarer +ek + +
  Kalax.1443s0005.1.p  96 avaaEADASHTQ---PKM-NVSMSKSASSISETSKGSGLSLTRtdarvNQRIRARERARERAKEKESET 160
                          212111222222...222.22222222333333333334444431124555777777888777776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-399158IPR005333Transcription factor, TCP
PROSITE profilePS5136930.0131068IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
IFRVSRASGG KDRHSKVLTS KGLRDRRVRL SVSTAIQFYD MQDRLGYDQP SKAVEWLIKA  60
AADSIAELPS LTGPFPETAR QLCDAKLGFE SSSAAAVAAE ADASHTQPKM NVSMSKSASS  120
ISETSKGSGL SLTRTDARVN QRIRARERAR ERAKEKESET EQTVVNAGQR RRQTAGNPIS  180
HSTINNDNSS SFTELLTGAI GGNQTGANPD GKFDQHATTT TATTAAAFTT IKPYPHKSKK  240
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-231569155Putative transcription factor PCF6
5zkt_B8e-231569155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141153RIRARERARERAK
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.14e-67transcription factor TCP2
RefseqXP_015875894.14e-67transcription factor TCP2
RefseqXP_015875904.14e-67transcription factor TCP2
SwissprotQ93V434e-46TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A067L0H72e-63A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGGorai.009G153900.14e-64(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]