PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1096s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 360aa    MW: 39258.9 Da    PI: 9.2921
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1096s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.11e-2852100457
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                           ++keClkNhAaslGgha+DGCgEfmps     +a+ +kCaACgCHRnFHR+e 
  Kalax.1096s0013.1.p  52 PVFKECLKNHAASLGGHALDGCGEFMPS-----SAEPMKCAACGCHRNFHRQEA 100
                          579************************9.....6789**************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-2453100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-165399IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.7845499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-255499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.02E-15231303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-26233303IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-23242299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDLVDHSGYN PNPFAPKPDP ATSQKIPQQD VVAKTLSFAS YTPTLPPHAV EPVFKECLKN  60
HAASLGGHAL DGCGEFMPSS AEPMKCAACG CHRNFHRQEA AAPPIHHRDP PPLPPPPSMP  120
MVGVTPPHFS LLPRRFSSSP STSPSPSPPR RLNPPPPPPP PPAAAGSLQQ YSPGPHMLMA  180
LSTGKAASPP PPDHHRQRST PTSSPPTRHS KQTSHHHQTR RNPNPDPNPT RKPDNSNPAA  240
KRKRFRSKFS DEQKEKMRRF ADALNWKMQK NDEKLVADFC ADVGVSKGVL KVWMHNNKNT  300
AGKIPRTSNN NSNHSSSYNN MEDDDPDHQQ VHVNDDNYEL GLGVDHHHLL GNNGSCCSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202433011876ZF-HD homeobox family protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-23homeobox protein 34