PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1072s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 169aa    MW: 17495.4 Da    PI: 4.4131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1072s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-0587108223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C +Cgk F ++  +  H+r+H
  Kalax.1072s0004.1.p  87 PCLICGKAFHSQKAFFGHLRVH 108
                          7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-585111No hitNo description
SMARTSM003550.008386108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01486113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAGKGDKAAG KKVAEGEEDS GAKDDNPDES VALPAKKRNR PDVAAGGSSV AAAASESRVP  60
AAVVIQEPNL PAAAAVPAAR GERLLWPCLI CGKAFHSQKA FFGHLRVHPE KTYKGAFPPP  120
TFDPEGSPEP EAEQVEAAVP PVPNEEEASG VNTGIDLNVP PREEDDEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.14e-10C2H2 family protein