PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0620s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 1389aa    MW: 154238 Da    PI: 7.0416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0620s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001213531379123
                           EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                           ykC+   Cg sF+  s++ rH r+  H
  Kalax.0620s0006.1.p 1353 YKCKaeGCGVSFRFISDFSRHRRKtgH 1379
                           99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.7E-141556IPR003349JmjN domain
PROSITE profilePS5118313.6191657IPR003349JmjN domain
PfamPF023751.6E-141750IPR003349JmjN domain
SMARTSM005585.0E-35235406IPR003347JmjC domain
PROSITE profilePS5118432.11241406IPR003347JmjC domain
SuperFamilySSF511976.04E-25262402No hitNo description
PfamPF023732.1E-35270389IPR003347JmjC domain
PROSITE patternPS00028012721296IPR007087Zinc finger, C2H2
SuperFamilySSF576676.6E-712811330No hitNo description
PROSITE profilePS5015712.77812931322IPR007087Zinc finger, C2H2
SMARTSM003550.3212931317IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012951317IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-613001323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.19613231352IPR007087Zinc finger, C2H2
SMARTSM003550.00213231347IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-1013241347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013251347IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-1013331379No hitNo description
Gene3DG3DSA:3.30.160.602.1E-1013481376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.63713531384IPR007087Zinc finger, C2H2
SMARTSM003551.513531379IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013551379IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1389 aa     Download sequence    Send to blast
MRDVEVPHWL IKLPLAPEFR PTDTEFADPI AYISKIENEA RAFGICKIIP PLPRPSKKYV  60
FSNLNRSLLK SPELGSDATA VKSCSGVNEG EVRAVFTTRQ QELGHTEKKD KAAIHMGQGA  120
VNKQVWQSGE LYTLDQFESK AKAFYRSTLG MVKDISPLAI EALFWKADSE NHLYVEYAND  180
VPGSGFGEPS GNGSFQHFHK RRRKRVFRRT TESSRKKYEV CGANESHADI QENNLSSETS  240
NVIVKVNTHV DAPVISDKTA NDIPGVTSPM VYIGMLFSWF AWHVEDHELH SLNFLHTGSS  300
KTWYSVPGDY AFAFEEVIRT RAYGENVDRL AALMMLGEKT TLLSPEVVVA SGIPCCRLVQ  360
NPGEFVVTFP RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNF LPMLSHQQLL  420
YLLAMSFLTR VPRAVLVGAR SSRLRDRMKE ERELSVKKAF IEDILNEDKL LSVLRGAKST  480
YRAVLWDPES LPSLSKEPSL LSKMENTVAN ASDSSNSSVF QSNHNLLDEM RFYTETMKDD  540
YVDDDGFLSD FQVDYGAVAC VACGILGFPF MTVVQPSEAA SLHLRPLLEN KSVAQDGSCL  600
DLDVSIDHSI SVLSKPVVSS NMKVNKEQNA SHRFFRPRVF CLEHAVQVIE LLESKGGAEV  660
LVICHSDFQK IKSHAVAVAG ELGSKYNYDM VPLDCASLED LNLIDLAVDE DREESDEDWS  720
SVLGINLRCC IKMRKNSSSK HVDLALKLFG LPSNITLGSS LSRLKWQHTR SRSKTPILHD  780
SKQVSKLVSN GIKKEKKIIQ YKRRKSKPKS FGSAPVRNTS LDCEENSASF SSDTDIAGIS  840
MSELDNSVNI NKSPASMTEL NQVEGSLVTP WPSLEVMHSD IVDQLEESGS VRCVCVSTSV  900
DVVGADNGVH DTRYKGETSL NCAVEHSSCA DSPVRMEGMS ASENNGQIRS TDTTNIKDTV  960
EHEIAIHVDG KNVLTSMEPD LVAGGIPSAA NPMLGKTHMD NFTEWEVKDE VCAVIPYNER  1020
SNEGSPSLLS QSLTQMSAFE GSSTLLPLAS CSTEEYVLVK DTRSSKVADT PGTEENLCST  1080
SLAKLRDNSI NAEPAYLVSI ETSVGDDSSY EVVQIRTMKG VDDKEDPNNH RLTDFNQVSL  1140
MSAGDESAAA KYMGASKDLY NVDPVCSLAK TGETENNRVK PKPSNRNARK RNRELEQLRE  1200
KKSEVADFIR SPCEGLRPRS KIASSSHYID VRHSYTEEPA IAKKKLKQIP ADTSTSTPNK  1260
TGKQELKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC GKKFSCHRYL IVHQRVHVDD  1320
RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC GVSFRFISDF SRHRRKTGHG  1380
GDTHSPLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_A7e-44144677390HISTONE DEMETHYLASE JARID1C
5fwj_B7e-44144677390HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
STRINGPOPTR_0010s23160.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein