PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0509s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 442aa    MW: 50003.9 Da    PI: 7.9118
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0509s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.52.4e-421283062133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                          +gkkdrhski+T++g+RdRR+Rls+++a++fFdLq+ LGfdk+s+tieWL++++k ai e +g+                          
  Kalax.0509s0029.1.p 128 TGKKDRHSKICTAQGLRDRRMRLSLQVARKFFDLQETLGFDKASNTIEWLFNMSKNAIMEVMGSdysrmdgpqrsfvdkcgginnptsgn 217
                          79*********************************************************************************9998888 PP

                  TCP  66 ...ssssaseceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                             s  ++s+ce++++  s++ ++++                   ++++s+ k+ ks++ +      +k+ r +arararert ekmr +
  Kalax.0509s0029.1.p 218 etkSIAASSRCEKNEDTYSSKCKQIAinqttykdeggcnklksvnRHCRSTSKKLKSHQMSF-CPRHKKDARDEARARARERTLEKMRFR 306
                          87655555778666666666645555667778888899999999888888876666666666.56667799****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-42128304IPR005333Transcription factor, TCP
PROSITE profilePS5136933.575130188IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.308285302IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MFSSSNSDGD SDCFRQYNGS ISCSSFQFGS TSSPVVWEED QFLVDHLLFM PQEQQKFLFG  60
HEAELLPLLD HHDFVDGMIE AGNLIGDQVS SAIPSQNNKK KDGVGSSNYE NKKDGKPVKK  120
PPNKRIRTGK KDRHSKICTA QGLRDRRMRL SLQVARKFFD LQETLGFDKA SNTIEWLFNM  180
SKNAIMEVMG SDYSRMDGPQ RSFVDKCGGI NNPTSGNETK SIAASSRCEK NEDTYSSKCK  240
QIAINQTTYK DEGGCNKLKS VNRHCRSTSK KLKSHQMSFC PRHKKDARDE ARARARERTL  300
EKMRFRVIED PDQRLFTTCL EEAAATNPSN MTTFSEQIGS CSPFEQVDEI SGAQSQSVED  360
LILHADWEIE GARFYSSYIF DTTEHHHAVR TTTTAINLVQ IKQLKFLTWN ELPENLLYVI  420
KHASAQNGSF NLSSYHFNKN T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119KKDGKPVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-25TCP domain protein 12