PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0440s0022.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 179aa    MW: 20963.9 Da    PI: 6.5473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0440s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00012345123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C++ Fs+   L  H++ H
  Kalax.0440s0022.1.p 23 FKCSFCKRGFSNAQALGGHMNIH 45
                         89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-52147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-62150No hitNo description
PROSITE profilePS5015711.3852350IPR007087Zinc finger, C2H2
SMARTSM003550.0082345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MELNHQLWSA TDYHHHQDII RSFKCSFCKR GFSNAQALGG HMNIHRKDRA RLRQLSCNDD  60
HEDHDHDDDD TAQEHKQSMS NYHHRIRRLK RSGDRGRESH SSQQQQQQQQ QPPLNLFIQV  120
EAGQWVAGCD DHGMMHGGHH DESYHEDEDL FPELDLELRL GPDRDHRMPA CLGTRNFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-15C2H2 family protein