PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0433s0017.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 351aa    MW: 39809.9 Da    PI: 7.1683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0433s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06188207120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          y+Cp C ksFsr  nL+ H+
  Kalax.0433s0017.1.p 188 YSCPVCFKSFSRYNNLQMHM 207
                          99*****************9 PP

2zf-C2H214.97.5e-05272294123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C ksF  k + ++H +++
  Kalax.0433s0017.1.p 272 FTCRKCQKSFAVKGDWRTHEKNC 294
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-5180210No hitNo description
PROSITE profilePS5015710.596188215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-7188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM0035540272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLFFLNLYLA YLSFLTSDSP KTSLLIMKDL LSPNRSVTKN GLSYFNFIPL NPNPNPFPRT  60
LPLLNNFEPP HSSQAPTPMD EDYDDSFCNR GRSEGGSSVA PLSLNIGLPD DETYSSTVVS  120
PSSSGSKLLE LQKNLFGDQS FREEGEEDED HDNEMGFLQC ASLKNLEKSV TQYWIPTPTQ  180
ILIGPTQYSC PVCFKSFSRY NNLQMHMWGH GSQYRKGLES LRVIQPRAML RLPCYCCSQS  240
CKHHIDHPKS RPLKDFRTLQ THYKRKHGTK TFTCRKCQKS FAVKGDWRTH EKNCGKFWYC  300
TCGSDFKHKR SLKDHIRAFG DDGQVGHAAI GIEDDLEHDG DDHGCVIESE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052543.11e-102TRANSPARENT TESTA 1 protein, putative
SwissprotQ9SVY14e-97ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A061DVJ51e-102A0A061DVJ5_THECC; TRANSPARENT TESTA 1 protein, putative
STRINGSi006616m1e-100(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.15e-94C2H2 family protein