PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0397s0034.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 481aa    MW: 51984.9 Da    PI: 9.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0397s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Kalax.0397s0034.1.p 74 FICEICNKGFQRDQNLQLHRRGH 96
                         89*******************88 PP

2zf-C2H212.20.00056151173123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Kalax.0397s0034.1.p 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-77396No hitNo description
SMARTSM003550.0227496IPR015880Zinc finger, C2H2-like
PfamPF121715.7E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355100116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MQQHMLSSSD DAFSIPNPSI RGFPPLQEND PNQNPKIDPN PVSNKKKRNL PGTPDPDAEV  60
IALSPKSLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEI PKKKVYICPE  120
KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYKC  180
DCGTLFSRKD SFITHRAFCD ALTEESARFA AQAASNNLSF RNDHTMLSDL SNGNNPQQLN  240
LPSGFGSSTG YPNQDISSIS QFDSVFRPDN FNAGMSDQMF GVGGSSGGLF GSSSSSMPDF  300
GQLPTSTSAS LSLSSTSIMS QTLMKPELLR NNSNINKTHT NMLVGTSSLY SSDTKTDKSP  360
HPSAAMSATA LLQKAAQMGS TRSTTAAAAS NPFFGNNNTN NAATIPALLS SSSTSSRPSN  420
ISLNSLRPDN LRNNLTRDFL GISNGDAPAS GSSNPFSPNE LAKFAASAAA TGFTQFAGNH  480
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027297.11e-151C2H2-like zinc finger protein, putative
SwissprotQ700D21e-130IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A061EZX01e-151A0A061EZX0_THECC; C2H2-like zinc finger protein, putative
STRINGPOPTR_0006s13130.11e-148(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-105C2H2-like zinc finger protein