PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0386s0009.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 346aa    MW: 37392.7 Da    PI: 8.5958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0386s0009.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000823659123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         +kC+ C+k  s+ s +  H    H
  Kalax.0386s0009.2.p 36 FKCHVCHKKLSTASGMAIHVLQvH 59
                         89***************9987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.727766IPR003656Zinc finger, BED-type
SuperFamilySSF576674.76E-51161No hitNo description
SMARTSM003557.71235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3281235IPR007087Zinc finger, C2H2
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.13659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGKKKKRAST KYWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK  60
ETVSTVPNAK PGRESTEIDI YGMQGIPPDV LAAHYGEEEE TPSKLTKYDP SSQLHGAMTS  120
GSFSLSHPPQ SAAVPPHPLY NPAMPRPPIG WPLPPRPQPW FQPHSSGHLL GPMGAIPRPL  180
FPVHNVQPPP AAIPAMQSPL PTVPPAPPSF ASISVSQPLF PVGSSTNLPS QSSPMLSASI  240
PLSSPMGSFN GIGGTVMNMH SYASGPNTGG PSIGPPPVIA NKAPAVNSSA NEVYLVWDDE  300
AMSMEERRMS LPKYQVHDES SQMSSVDAAI DRRILESRLA HRMAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436618.11e-159PREDICTED: protein SUPPRESSOR OF FRI 4
SwissprotQ9C5G01e-131SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A0D2R9M61e-160A0A0D2R9M6_G
STRINGSolyc02g032120.2.11e-146(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-125C2H2 family protein