PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0364s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 208aa    MW: 22227 Da    PI: 9.1832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0364s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000176991123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++Cp C+k F ++  L  H++ H
  Kalax.0364s0010.1.p 69 FVCPLCSKAFGSSQALGGHQNAH 91
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-56795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-66797No hitNo description
PfamPF139124.0E-76993IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGHNVCIRIP SSFDDTFKEK SVRLFGFEIS PHGASELSSS RGSSDGDESP NVSRNMIASS  60
KRLKVSKRFV CPLCSKAFGS SQALGGHQNA HKKQKVMMSK KMQTKACGSQ ASSSSSWCFD  120
QGFDSQISFS DRDGDLMYGP MVQNWCGLAQ TGAQQGSAGV FTLTTGDDRS SMIGPKGSCN  180
NLLDLRLGLS FQSNLRSHVM SSTGSII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.17e-08C2H2 family protein