PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0352s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 130aa    MW: 14314.7 Da    PI: 7.6213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0352s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-054466123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C + F ++  L  H++ H
  Kalax.0352s0031.1.p 44 FSCNYCQRKFYSSQALGGHQNAH 66
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-64271No hitNo description
Gene3DG3DSA:3.30.160.602.6E-44486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0944471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSYFYSPDNS INTSLHLSPP NLRGLERSSS SGSTDHNSNP LRVFSCNYCQ RKFYSSQALG  60
GHQNAHKLER TLDKKSRELF SSSGASQAND YGGDDLVRRF HDGAGMIVYG GGNSVYQDEF  120
NPLDLSLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474225.13e-25PREDICTED: zinc finger protein 2
RefseqXP_012474223.13e-25PREDICTED: zinc finger protein 2
TrEMBLA0A0D2MW773e-25A0A0D2MW77_G
STRINGPOPTR_0018s10230.12e-23(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.15e-23zinc finger protein 2