PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0340s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 469aa    MW: 50788.6 Da    PI: 7.7089
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0340s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.6e-36742252132
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                +++s+s + a
  Kalax.0340s0020.1.p  74 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSIAELPSLtgpfpetprqlcdaklGFESSSVAAA 163
                          689*************************************************************99999888888888885555544433 PP

                  TCP  76 esssssasnsssgkaaksaakskksqksaasalnlak.esr....akarararertrekmri 132
                          +++  +++++++ + + s+  s+ s++s+ s l+l + + r     +ar+rarer +ek + 
  Kalax.0340s0020.1.p 164 AAEADASHTQQKMNVSMSKSASSTSETSKGSGLSLTRtDARvnqrVRARERARERAKEKESE 225
                          33333333333344444444455555555555666665555222266666666666666544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-4075224IPR005333Transcription factor, TCP
PROSITE profilePS5136930.96676134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDVEEFQSQI YTSKYPRVST TNNGGGGGDE DDADDTPTRN HHSTVVAAEP QMLADSMFRG  60
WQHSSRIFRV SRASGGKDRH SKVLTSKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADS IAELPSLTGP FPETPRQLCD AKLGFESSSV AAAAAEADAS HTQQKMNVSM  180
SKSASSTSET SKGSGLSLTR TDARVNQRVR ARERARERAK EKESETEQAV VNAGQRQRQS  240
AGNPISHPTT NNNNSSSFTE LLTGAIGGNQ TGSSPNSAPM MMDYFTNVAR PTLGSHHHHQ  300
AAAACLFLGQ TQMGNSINMP QAFHLTTGEH HNHHQQQHHG LQHFSFGQEN LIPAGNEYDL  360
NFTISSSSPS SLAGFNNRGT LQSNSPPAAS PSSLLHHSNQ QLQRYAASME GSNNVVPAFF  420
MTTASASSAM ETNHQHHHFP TGLDGRLHLY YGDGGGRHCD HKDGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2481135155Putative transcription factor PCF6
5zkt_B7e-2481135155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207219RVRARERARERAK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.11e-115transcription factor TCP2
RefseqXP_015875894.11e-115transcription factor TCP2
RefseqXP_015875904.11e-115transcription factor TCP2
TrEMBLW9QCB81e-104W9QCB8_9ROSA; Uncharacterized protein
STRINGXP_010086998.11e-105(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2