PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0327s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 269aa    MW: 28476.6 Da    PI: 10.7614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0327s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19e-3640138489
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                           ++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  a++ +  +   ss+    
  Kalax.0327s0012.1.p  40 PRKASKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVAGTLQIPTT--SSSrpdp 127
                          56789*********************************************************8888855532222222222..2221233 PP

                  TCP  89 ..........k 89 
                                    k
  Kalax.0327s0012.1.p 128 kdllpgqvefK 138
                          33333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3043136IPR005333Transcription factor, TCP
PROSITE profilePS5136927.0634498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGSVQKPEFD RGDDVTVTAS TAVSMKEEPF AEATKPAVPP RKASKDRHTK VEGRGRRIRM  60
PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG TGTVPAIAMS VAGTLQIPTT  120
SSSRPDPKDL LPGQVEFKKR KRVGDTFPTA TDANAAITAS SSSLKTAFAP PQVVSSRPGI  180
VPMWAIPSNA VWMVPLATNQ QPIWALSPTP TPIVTLAARP ISSAAASSVP PPPSSASTKT  240
TPSSSSTRTH PLRDLSLEIR DKTELHLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582875.24e-73LOW QUALITY PROTEIN: transcription factor TCP9
SwissprotQ9LT896e-58TCP19_ARATH; Transcription factor TCP19
TrEMBLF6I3607e-74F6I360_VITVI; Uncharacterized protein
STRINGVIT_15s0048g01150.t011e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-57TCP family protein