PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0309s0023.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 361aa    MW: 40494.6 Da    PI: 7.4127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0309s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.94.3e-391513064133
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesss 79 
                           k rhski T++g+RdRR+Rls+++a+rfF Lqd+LGfdk+s t+eWLl +++ +i + +g          +s     s c   e++s++
  Kalax.0309s0023.1.p 151 TKGRHSKIDTAQGPRDRRMRLSLDIARRFFGLQDMLGFDKASRTVEWLLSKSQFEINKVAGRkdndafnsaKS--DsfSPCecgEEVSEV 238
                          588***********************************************************88887765422..234555446666666 PP

                  TCP  80 ssasnsssg.............kaaksaa..kskksqksaasalnlakesrakarararertrekmrik 133
                           +++n s++             + ++++   k + s++++  ++  +kesr+karararert+ek++i 
  Kalax.0309s0023.1.p 239 DNKDNLSQSgamdtdketkksrS-KEKKIrgKVSVSSRKNGFNHLANKESREKARARARERTKEKKMIC 306
                          66664444477888888877542.222221233333333333344455*****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-41151304IPR005333Transcription factor, TCP
PROSITE profilePS5136930.664151209IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397285302IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFPTPDNNDS NSFAVPYSDH QYLFYSKLLD DVHIDNNYQN PACSPFSSFG LHFHADPPPP  60
FLYSSDHHEH PLQIQDNPGE EQLPRVTIHQ EFITAASSSS SARGYCTADE NFLQSGFAGD  120
GDPTDGIGGT SAVRPVKQHD DTVRNNGILL TKGRHSKIDT AQGPRDRRMR LSLDIARRFF  180
GLQDMLGFDK ASRTVEWLLS KSQFEINKVA GRKDNDAFNS AKSDSFSPCE CGEEVSEVDN  240
KDNLSQSGAM DTDKETKKSR SKEKKIRGKV SVSSRKNGFN HLANKESREK ARARARERTK  300
EKKMICHSQS YSKQQQFLNP EQHTYSYVDQ GHMMTDQDGS LANSTCWNPS STRTTIVNRL  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-23TCP domain protein 12