PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0258s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 207aa    MW: 22316.8 Da    PI: 10.2816
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0258s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.83.9e-3441515135
                  TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec..e 74 
                          +drhsk+ T++g+RdRR+Rls+++a++f+dLqd+LG d++sk++eWL+++   +i el+++                  +  s+s++   
  Kalax.0258s0029.1.p   4 EDRHSKVLTSKGLRDRRMRLSVSTAIQFYDLQDRLGNDQPSKAVEWLIKAVADSIAELPSLtgpfpetarqlcdaklgfE--SSSAAavA 91 
                          79***********************************************************9*99999999999999552..33333221 PP

                  TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                            ++  +++++++ + + s+  s+ s++s+ s l+l + + r ++r rarer +e+ + k++
  Kalax.0258s0029.1.p  92 --AEADASHTQQKMNVSMSKSASSTSETSKGSGLSLTRtDARVNQRVRARERAQERAKEKES 151
                          ..222222222233333444445555555555566666666655555555555555555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.954361IPR017887Transcription factor TCP subgroup
PfamPF036345.0E-374151IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAVEDRHSKV LTSKGLRDRR MRLSVSTAIQ FYDLQDRLGN DQPSKAVEWL IKAVADSIAE  60
LPSLTGPFPE TARQLCDAKL GFESSSAAAV AAEADASHTQ QKMNVSMSKS ASSTSETSKG  120
SGLSLTRTDA RVNQRVRARE RAQERAKEKE SETEQTVVNA GQRRRQTAGN PISHSTTNNN  180
NSSSFTELLI GAIGGNQLGQ TPTRLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-22862155Putative transcription factor PCF6
5zkt_B8e-22862155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.14e-59transcription factor TCP2-like
RefseqXP_011096600.14e-59transcription factor TCP2-like
RefseqXP_020554008.14e-59transcription factor TCP2-like
SwissprotQ93V439e-38TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A067L0H73e-55A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGGorai.009G153900.14e-55(Gossypium raimondii)
STRINGXP_004168782.19e-56(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-31TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]