PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0222s0033.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 255aa    MW: 27510.7 Da    PI: 6.6393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0222s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05154176123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kalax.0222s0033.1.p 154 HQCSICGSEFSSGQALGGHMRRH 176
                          79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035520087109IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.56E-688109No hitNo description
PfamPF139120.001788102IPR007087Zinc finger, C2H2
SuperFamilySSF576678.56E-6149176No hitNo description
PfamPF139121.6E-11153178IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702154176IPR007087Zinc finger, C2H2
SMARTSM003550.0099154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MELPEHEAIA VAAPVHQEPL TLTIDRGKRA KRPSRVSSDE EEEDERRSYD SVVTEEEQDL  60
AHCLILLARA ELVRGGKRKV ADVGGCLECK ACNKTFPSFQ GLDGRRAGHG KPRSEINDCD  120
AEKQLSTSLQ LSTANSRNGN VSAVKASALS NRVHQCSICG SEFSSGQALG GHMRRHRAVP  180
APVRSPCTGV SSPATSMGEV KTLSVFSLDL NLPAPEESEI DHQRGVEDEQ NAAFFQQNTP  240
VFSAHAHALR GCHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-31C2H2 family protein