PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0190s0035.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 211aa    MW: 23147.7 Da    PI: 6.6309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0190s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F ++  L  H++ H
  Kalax.0190s0035.1.p 66 FSCNFCKRKFYSSQALGGHQNAH 88
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-66393No hitNo description
PROSITE profilePS5015711.2196693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MMILETNEGT EASATNGGEE SFGGEDGETP EWLNLSLGRE ESVPASAEDG GSSDGQSTRP  60
VPAKTFSCNF CKRKFYSSQA LGGHQNAHKR ERSAAKRFLS FQAANSPMVR TLGVSAHSAV  120
QKPAGTGRDN NVLTARLLAM ARFAHVSSGM GWTGLTLDEA MNMMWPGSFH FRQRQQELQL  180
QQQQEQDKDQ QLQQHLPDQH QQKVDLSLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.17e-20zinc finger protein 7