PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0152s0077.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 241aa    MW: 26181.1 Da    PI: 7.3894
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0152s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.75e-3252107460
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          vrY+eClkNhA+ +Ggha+DGCgEf+++ ge+gt ++l+CaAC+CHRnFHR+e++ e
  Kalax.0152s0077.1.p  52 VRYRECLKNHAVGIGGHALDGCGEFIAA-GEDGTLESLTCAACECHRNFHRKETDGE 107
                          89*************************9.999*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2952104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2953103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2053105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27854103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.1E-18166239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-30169239IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-26178235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDQFGHDHQH GEEMEEEEMV PPHESLTGLR RLNVPGEGGS SGAGSGRRAP LVRYRECLKN  60
HAVGIGGHAL DGCGEFIAAG EDGTLESLTC AACECHRNFH RKETDGESAF HPNAQFSPYY  120
HRSPPPGFLH MALPPSRRPL ALPSREEHDD MSNPSSSGGG GVGGGGRGAG STPGGGSKKR  180
FRTKFTAEQK ERMMELAERL GWRLQRQDDA LVQQFCAENG LSRQVLKVWM HNNKNTLGKK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-271772361675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266504.12e-77PREDICTED: zinc-finger homeodomain protein 1-like
RefseqXP_012450172.13e-77PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB615e-70ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0D2V5793e-75A0A0D2V579_G
TrEMBLB9RJU04e-75B9RJU0_RICCO; Transcription factor, putative
STRINGVIT_18s0001g07140.t012e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-66homeobox protein 22