PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0134s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 406aa    MW: 45863.3 Da    PI: 6.7622
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0134s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1363.2e-421533083133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssa..........sec.eaess 78 
                           kkdrhski T++g+RdRR+Rls+++a rfF Lqd+LGfdk+skt+eWLl +++ +i + +++   +   a          sec e++s+
  Kalax.0134s0016.1.p 153 LKKDRHSKINTAQGPRDRRMRLSLDIAQRFFGLQDMLGFDKASKTVEWLLSKSQSEINKVVRSkksD---AnnfksdsfgaSECcEEVSE 239
                          59*************************************************************6550...44444445555666677777 PP

                  TCP  79 sssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          +++++  s++              k+ k++ k + s++++  ++++ kesr+karararert+ekm+i 
  Kalax.0134s0016.1.p 240 VENKDDLSQSgamdinkenkksssKQGKNNGKVSVSSRKDGFNHHVTKESREKARARARERTKEKMMIC 308
                          777773333345566666666654555555577777777777899999******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.041154212IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-44154306IPR005333Transcription factor, TCP
PROSITE profilePS5137012.397287304IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFPAPDGNNS SSSNSFIVPY PDQPFLYSKL FDDIHIDTEY HNPYSPFSFL DQFHAHSPFF  60
NSSDHHEQQP LEIQDSPFVQ HHEEQQTVET TYYQEFTMAA TSNNSASTGG YCTTENFHGN  120
GFPGEPTNGN SSTSASVGPV KQHDAVRKNG TLLKKDRHSK INTAQGPRDR RMRLSLDIAQ  180
RFFGLQDMLG FDKASKTVEW LLSKSQSEIN KVVRSKKSDA NNFKSDSFGA SECCEEVSEV  240
ENKDDLSQSG AMDINKENKK SSSKQGKNNG KVSVSSRKDG FNHHVTKESR EKARARARER  300
TKEKMMICNP QSQTKQQNNN VHNFSNMDQN MLTQVKKQDL LNVEQHTYSY VDQGHMMTDQ  360
DESLANMYTT YWNPSSATVF NHLQQQNNGT SQQLQVGGIQ FYAMP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-26TCP domain protein 12