PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0118s0071.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 94aa    MW: 10083.5 Da    PI: 9.3644
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0118s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.52.4e-312782458
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                         v YkeC+kNhAa +GghavDGC+Efm+   ee g a+al CaACgCHR+FHR+ ve
  Kalax.0118s0071.1.p 27 VIYKECQKNHAAGVGGHAVDGCREFMAMGAEEtGGADALVCAACGCHRSFHRKVVE 82
                         79*************************98888899******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-13183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-272781IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.8532980IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-262979IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MRKKQVVVRT KEPSKKSNSS NQIYRYVIYK ECQKNHAAGV GGHAVDGCRE FMAMGAEETG  60
GADALVCAAC GCHRSFHRKV VENMPASFSS SSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879406.12e-33PREDICTED: mini zinc finger protein 2
SwissprotQ2Q4932e-25MIF3_ARATH; Mini zinc finger protein 3
TrEMBLF6H5T34e-32F6H5T3_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00760.t011e-31(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-19mini zinc finger