PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0113s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 340aa    MW: 36110.5 Da    PI: 8.5212
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0113s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.74.3e-3486175290
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai e+tgt++ +a +    ++ +  + +sssg++
  Kalax.0113s0009.1.p  86 ATGRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIYEATGTGTVPAIAIsVGGTLKIPTTTSSSGES 175
                          67899***********************************************************77777333211222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-2891171IPR005333Transcription factor, TCP
PROSITE profilePS5136925.20592146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMNHHHRQID PENDEDDDGA DASDLSRSTG AKNNGSSNGD SKPYPETLSF RSHLLKQEPS  60
DSDHFRQHSR SFGMVPVPMQ MPVTVATGRR STKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE QAIYEATGTG TVPAIAISVG GTLKIPTTTS SSGESSVKKM  180
KRPSTSEFYD VSVSSGLRHV AMSPIPQGLV PIWAVGNPPG MMIPSNAVAA GGFWMIRQPP  240
AMPAATSSQP QLWTISPSVT PVFNMAGEPA PADVIAPSSA LDSSLVGANK SSKQLTTMAP  300
SHSSSSSASK TQMAVEIFDR GEALQLQLMG GSSSPHSSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282409.14e-98PREDICTED: transcription factor TCP9
RefseqXP_010661412.14e-98PREDICTED: transcription factor TCP9
TrEMBLF6HUI63e-96F6HUI6_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04590.t016e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-58TCP family protein