PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0102s0089.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 241aa    MW: 26537.1 Da    PI: 10.3873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0102s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055577123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+++F++   L  H+++H
  Kalax.0102s0089.1.p 55 YTCSFCTRRFKSAQALGGHMNVH 77
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-65281No hitNo description
PfamPF139124.6E-65479IPR007087Zinc finger, C2H2
SMARTSM003550.00325577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7415582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEKVVMRSRC EAVVLSNRDM NRKLKDKLRY KDEGTSNGVV TRDADLLTSW PPRYYTCSFC  60
TRRFKSAQAL GGHMNVHRRA RAILRSQSMS TLPSPPSSPW LVKTVITPAD HPLQDDNHNH  120
LFILPNPNPH WPSNTPHHAS VISPSPSYLP IISTTSTARS STSKHKHPLL AAAANKHAPQ  180
GLYSTGERDK KNSVKAEMNG GLRSRTDQDD VVVRLSLCTG LITSSSAADQ AIDLELRLGV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A2e-115077229Transcriptional regulator SUPERMAN
1njq_A2e-115077229superman protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-18C2H2 family protein