PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0069s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 431aa    MW: 48309.9 Da    PI: 7.2668
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0069s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.29.9e-411283012128
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                          +gkkdrhski+T++g+RdRR+Rls+++a++fFdLq+ LGfdk+s+tieWL++++k ai e +g+                          
  Kalax.0069s0004.1.p 128 TGKKDRHSKICTAQGLRDRRMRLSLQVARKFFDLQETLGFDKASNTIEWLFNMSKNAIMEVMGSdysrmdgpqrsfvdkcgcinnptsgn 217
                          79************************************************************************9999999999988887 PP

                  TCP  66 .......ssssaseceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertre 128
                                 +    s ce++++  s++ ++++                   ++++s+ k+ ks++ +       k+ r karararert e
  Kalax.0069s0004.1.p 218 etksiaaP----SLCEKNEDTYSSKCKQIAtnqttykdeggcnklksvnRQCRSTSKKLKSHQISF-CPRHTKDARDKARARARERTLE 301
                          77533330....334444444443333333444555666678888888777777765555555555.677888999**********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-42128301IPR005333Transcription factor, TCP
PROSITE profilePS5136933.575130188IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.175285302IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MMFSSSNSNG DSDCFRQYNG SISCSSFQFG STSSPVVLEE DQFLVDHLLF MPQEQQKFLF  60
GHEAELPLLD HHDFVDGMIE AGNLIGDQVS NAIPSQNHKK KDGVGSSNYE NKKDSKPVKK  120
PPNKRIRTGK KDRHSKICTA QGLRDRRMRL SLQVARKFFD LQETLGFDKA SNTIEWLFNM  180
SKNAIMEVMG SDYSRMDGPQ RSFVDKCGCI NNPTSGNETK SIAAPSLCEK NEDTYSSKCK  240
QIATNQTTYK DEGGCNKLKS VNRQCRSTSK KLKSHQISFC PRHTKDARDK ARARARERTL  300
EIIRLRVIQD PDQRLFTTCL EEAAATNPSN ITTFSEQIGS CSPFEQVDEI SGAQSQSLED  360
LILHADWEIE GARFYSSYIF DTTEHHHAVR TTTTAINLGE QSPDSISYMT SASQMFTNQL  420
CISSNTSTNN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119KKDSKPVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-25TCP domain protein 12