PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0044s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 500aa    MW: 52668.3 Da    PI: 9.2103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0044s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-056183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kalax.0044s0060.1.p 61 FVCEICSKGFQRDQNLQLHRRGH 83
                         89*******************88 PP

2zf-C2H213.10.00029137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Kalax.0044s0060.1.p 137 WKCEKCSKKYAVQSDWKAHAKIC 159
                          58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.58E-76083No hitNo description
Gene3DG3DSA:3.30.160.605.9E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0366183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355220102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.58E-7132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAASSASGGD ASVSSSGDQP VAAAPPLKAA VKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLK QRSSKDVKKR VYVCPESTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKTWKCE KCSKKYAVQS DWKAHAKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARATETQA PKRNGKGSHP RDDPKNQNAA AAPGSPQPAP TADDVLSEAP  240
DSVVKNTEEV RQQEVAAGLT GSCNVSGSPS SNSSPGSSMF ASLFASPSAS ASMQTRTPAF  300
TDLMRSVALQ GTPEFARQSS VEPVSLCLSA NQGSSSFFGT AGQERRQYAP PPQAAMSATA  360
LLQKAAQMGS SASNASFLRG LGVMSSSPAS TGQQESFPWS RMQMEQDRPA IQPGLPSIGN  420
PGYNDVMLSH SSMFSPKQAT LDLLGLGMAA SGNSSVGLSA ALLTSIGGNL DVAAAASLNG  480
DITREDIGMK LLGSLTNTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383231.10.0hypothetical protein POPTR_0005s12710g
SwissprotQ9LVQ71e-153IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLB9MXR20.0B9MXR2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12710.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2