PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0033.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 1270aa    MW: 143110 Da    PI: 8.2969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003611531178123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           y+C    C+++F++k +L  H r+ +
  Kalax.0032s0033.1.p 1153 YQCDmeGCTMTFNSKQELLLHKRNiC 1178
                           99********************9877 PP

2zf-C2H214.30.0001211781200323
                           ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                           Cp   Cgk F ++ +L++H r+H
  Kalax.0032s0033.1.p 1178 CPvkGCGKKFISHKYLVQHKRVH 1200
                           9999*****************99 PP

3zf-C2H211.10.001212361262123
                           EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                           y C    Cg++F+  s++ rH r+  H
  Kalax.0032s0033.1.p 1236 YICAepGCGQTFRFVSDFSRHKRKtgH 1262
                           789999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.8E-142869IPR003349JmjN domain
PROSITE profilePS5118313.5362970IPR003349JmjN domain
PfamPF023752.5E-133063IPR003349JmjN domain
SMARTSM005581.3E-47194363IPR003347JmjC domain
PROSITE profilePS5118434.584197363IPR003347JmjC domain
SuperFamilySSF511971.62E-26212358No hitNo description
PfamPF023732.7E-37227346IPR003347JmjC domain
SMARTSM003557.111531175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.52811761205IPR007087Zinc finger, C2H2
SuperFamilySSF576672.47E-611761212No hitNo description
SMARTSM003550.003111761200IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-611771199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011781200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-1012001228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55412061235IPR007087Zinc finger, C2H2
SMARTSM003550.003612061230IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012081230IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-912161260No hitNo description
Gene3DG3DSA:3.30.160.605.5E-912291259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.80312361267IPR007087Zinc finger, C2H2
SMARTSM003550.7912361262IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012381262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1270 aa     Download sequence    Send to blast
MEKGGAEHQG QGQAGQREVF QWLKTLPQAP EYRPTLAEFH DPVSYIFKIE KEASRYGICK  60
IIPPVPPQLK KTSLANLNRS LAARAPDSAP AFATRQQQIG FCPRKSRPVQ RPVWQSGERY  120
TVQEFEAKAK VFEKNYLKRV GKRAGLSALE METLYWKASL DKPFTVEYAN DMPGSAFVQM  180
KPDRKWRETG DGVNVGETAW NMRGVSRSNL SLLRFLKEEI PGVTSPMLYI AMMFSWFAWH  240
AEDHDMHSLN YLHLGASKTW YGVPKDAAAA FEEVVRVQGY GGEINPLVTF ATLGEKTTIM  300
SPEIFIKAGI PCCRLVQNPG EFVVTFPRAY HTGFSHGFNV GEAANFATPE WLRVAKEAAI  360
RRASVNFPPM LSHAQLLYDL VFALCSRTSS INHGPRSSRL KDKRKSEGET VVKELFVQDV  420
LQNNDQLYLL AQGSCVVTLP ESASGFSISL QSSNRSLIDE KSSLTTGFCS QKEETSASKG  480
VISCGFGRQK SRKSLKNNVN FSVGDNLCSV SERSKPTLNS GESYPASRTS NRWATDQRVF  540
SCVACGILCF PCIAIIQPSE AAKKYIMSAD HSVFHDGIIP SGTTSDGLAV TGKDNINDMN  600
FSSRWREKSP PSSSYEFQEK NESDEVTSEI EEQPEAIGAL GLLASTYANS SDSEDEQFET  660
DSPVLADGPN FSKVSADSDF EFDDAPDHKQ EHDDETNAEH SLSSSKFHIE DEHALLNTVS  720
YQENEQGGPF VDNHHRYTYL DGPNEFPSDS ITKSDSVNHT ASKAKRTGYP RLYHNSSRMH  780
IFCLEHAVEI ESQLQKIGGA HMLLLCHPDY PRIEIEAKMI AEELGLYEHW NDIAFRDATK  840
EDEECIQTVL ENDKGTPRNG DWAVKLGIDL LYSVNLSRSS LYSKQMPFNS IIYNAFGRVP  900
PGEDALTPKM GKRVGNKQKR IKLAGKWCGK VWMSNQVHPL LIPRDQEEPE EDTIINDWPE  960
SDPDDTFNVN PNYACLDEPD TVTDKFGTKR KIVVYSRSNK KAKVSEKMDP IGSPDQAGCS  1020
TQRRPVRMVR SRYMKIEGSE DTKPLDKQKQ GLTQLISHDE DFEVRPRTRI RKRNPKFEED  1080
FEAERPLRKL VYSRKASKTP SRKPPVRSNE ANMKMEPASR SKSIRNEEAP RPRISPNGDA  1140
LRPRKLNGEE AAYQCDMEGC TMTFNSKQEL LLHKRNICPV KGCGKKFISH KYLVQHKRVH  1200
VDDRPLKCPW KGCKMAFKWA WARTEHIRVH TGVRPYICAE PGCGQTFRFV SDFSRHKRKT  1260
GHSTKKVRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_A6e-50273927360HISTONE DEMETHYLASE JARID1C
5fwj_B6e-50273927360HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663055.10.0PREDICTED: lysine-specific demethylase REF6
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLF6GTM20.0F6GTM2_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g09980.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6