PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0018s0117.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 372aa    MW: 41126.5 Da    PI: 7.3812
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0018s0117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.34.1e-32521602109
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg. 88 
                           g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak  i+el+ ++ ++  ++  +a++   s+s  s + 
  Kalax.0018s0117.1.p  52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDDIDELPPLQIPPGFNFidQAHQAMLSSS--SYAa 139
                          689*************************************************************88888666443333333333..2222 PP

                  TCP  89 kaaksaakskksqksaasaln 109
                          +++  a++++++q+++ s+ n
  Kalax.0018s0117.1.p 140 NQQVVATTPRSDQDQPGSKIN 160
                          333333344444444443333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.67954112IPR017887Transcription factor TCP subgroup
PfamPF036347.0E-2954171IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MIPRTRDGED FSDKLDNNDA NGGPSSHKAD STSSTAWLRS KDPRIVRVSR AFGGKDRHSK  60
VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNVAKDDID ELPPLQIPPG  120
FNFIDQAHQA MLSSSSYAAN QQVVATTPRS DQDQPGSKIN ASWEDAPVDL HKSSFWTGSS  180
QPRSAKSSKH VATREIIMNE KPEIWTKRMM SDDHQADDHK LETLELGHGG GGGMQMGSSS  240
YNNFFTRATT SNHSSLPNLL HSVLPYGSYY HFDYPSNFSL SSSSSQSDNH PHPHQSNYNV  300
VPTGPHVLVC PPGMAASQSY FPATTTSSAS AAPMELDPRQ FINHFQILSP TQQQHHQSSL  360
HMSLDDVNKK R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1759113155Putative transcription factor PCF6
5zkt_B2e-1759113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022751945.15e-87transcription factor TCP13-like
STRINGEOY036999e-84(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-48plastid transcription factor 1