PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0037.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 264aa    MW: 27963.1 Da    PI: 10.8738
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1164.9e-3640137489
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                           ++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  a++ +  + +ss +    
  Kalax.0017s0037.1.p  40 PRKASKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVAGTLQIPTTSSSRPdpkd 129
                          56789*********************************************************8888854432222222222222223333 PP

                  TCP  89 .......k 89 
                                 +
  Kalax.0017s0037.1.p 130 llpgqveS 137
                          33333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3043137IPR005333Transcription factor, TCP
PROSITE profilePS5136927.0634498IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGSVQKPELD RGADVTVTAS TAVLMKEEPF GEATKPAVPP RKASKDRHTK VEGRGRRIRM  60
PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG TGTVPAIAMS VAGTLQIPTT  120
SSSRPDPKDL LPGQVESKKR KRVGDTFPTA TDANAAITAS SSSLKTAFAP PQVVSSRPGM  180
VPMWAIPSNA VWMVPLATNQ QPIWALSPTP TPLVTLAARP ISSAPPPPSS ASTKTTPPSS  240
STRTHPLRDL SLEIRDKTEL HLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582875.29e-71LOW QUALITY PROTEIN: transcription factor TCP9
SwissprotQ9LT896e-59TCP19_ARATH; Transcription factor TCP19
TrEMBLF6I3606e-71F6I360_VITVI; Uncharacterized protein
STRINGVIT_15s0048g01150.t011e-71(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.17e-58TCP family protein