PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0180.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 358aa    MW: 39991.2 Da    PI: 7.631
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.21.4e-381483024132
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssss 81 
                           k rhski T++g+RdRR+Rls+++a+rfF Lqd+LGfdk+s t+eWLl +++ +i + +g          +s+s s c   e++s++ +
  Kalax.0005s0180.2.p 148 TKGRHSKIDTAQGPRDRRMRLSLDIARRFFGLQDMLGFDKASSTVEWLLSKSQFEINKVAGRkdngafnsaKSDSFSPCqcgEEVSEVDN 237
                          588***********************************************************9999887543333355555656666666 PP

                  TCP  82 asnsssg.............kaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                          ++n s++             +++k+   k + s++++  ++  +kesr+karararert+ek++i
  Kalax.0005s0180.2.p 238 KDNLSQSgamdtdketkksrSKEKKIRgKVSVSSRKNGFTHLANKESREKARARARERTKEKKMI 302
                          664444477788888877642222222244444444444455556*****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.284148206IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-41148301IPR005333Transcription factor, TCP
PROSITE profilePS5137012.397282299IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFPTPDNNDS NSFTVPYSDH QSLFYSNLLD DVHIDNNYQN PACSPFSSFG LHFHADPPPP  60
FLYSSDHHEH PLPIQDNPGE EQLPRVTIHQ EFITAASSSS SVRGYCTANE NFLQSGFAGD  120
PTDGIGGTSA VRPVKHDDTV RKNGILLTKG RHSKIDTAQG PRDRRMRLSL DIARRFFGLQ  180
DMLGFDKASS TVEWLLSKSQ FEINKVAGRK DNGAFNSAKS DSFSPCQCGE EVSEVDNKDN  240
LSQSGAMDTD KETKKSRSKE KKIRGKVSVS SRKNGFTHLA NKESREKARA RARERTKEKK  300
MICHSQSYSK QQQFLNPEPH TYSYVDQGHM MTDQDESLAN STCWNPSSTC TTIVNRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-24TCP domain protein 12