PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0317.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 428aa    MW: 47252 Da    PI: 8.5418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0317.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Kalax.0002s0317.1.p 58 YVCEICNQGFQRDQNLQMHRRRH 80
                         9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-55780No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975880IPR007087Zinc finger, C2H2
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035598109139IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.24E-5140165No hitNo description
SMARTSM00355130145172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLDHQASSNN NTARTASTSS FQNGLSSSKR KRRPAGTPDP DAEVVALSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLVRRD DNGSGNDGGG NQEARKRVYV CPEPSCLHHD  120
ASHALGDLVG IKKHFRRKHS NYKQWVCDKC CKGYAVQSDY KAHLKTCGTR GHSCDCGRVF  180
SRVESFIEHQ DACTIKRVDP PQHQRLPTAF QPACSSSTSP SGCGETASLA MSHFQRVMKQ  240
IPKVIQHQEP LSQHSNHPQQ HNLHELQLLP SSSNTTTALY DDKNETALLK LSMGISCGGQ  300
PRGEEEATIM RVAVAEKEYA EEVRRRSKRE LELAELEFEN AKRMRQQALG ELERAKALRD  360
QAVKKISSTM MQITCQACQQ QFQASANAAA APPLLPIMSE ESSHAVSFIS SAVSEGDGGD  420
GGGGGHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448065.11e-162hypothetical protein CICLE_v10015315mg
SwissprotF4IPE31e-142IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A067DC491e-163A0A067DC49_CITSI; Uncharacterized protein
STRINGPOPTR_0008s13980.11e-160(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-119indeterminate(ID)-domain 14