PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0864s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 219aa    MW: 24072.8 Da    PI: 6.9725
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0864s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-3971071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dPvyG++++i++lqqq+ +
  Kaladp0864s0008.1.p   7 PCGACKFLRRKCLKGCVFAPYFCHEQgASQFAAIHKVFGASNVSKLLAHLPVSDRSEAALTISYEAQARVHDPVYGCISHIFALQQQVVN 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+la+lk++
  Kaladp0864s0008.1.p  97 LQAQLAYLKQQ 107
                          *******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3386108IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGSSSPCGA CKFLRRKCLK GCVFAPYFCH EQGASQFAAI HKVFGASNVS KLLAHLPVSD  60
RSEAALTISY EAQARVHDPV YGCISHIFAL QQQVVNLQAQ LAYLKQQGGQ GQFNGTNSST  120
NPNWCHQLPG NNPILHHQNQ QTQVFNQTNL THLMNMASME SSENSISSRQ NQVVDPYSCS  180
YDETNSQTLD EIDERKWGFE DADDLRSVAF RGGGLCPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199390.13e-76hypothetical protein PRUPE_ppa025889mg
SwissprotQ9M2J74e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLM5VHN04e-76M5VHN0_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04200.11e-72(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-51lateral organ boundaries-domain 29