PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0630s0072.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 192aa    MW: 20208.2 Da    PI: 9.8856
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0630s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.2e-43221221100
               DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +CaaCk+lrr+C+kd C++apyfpae+p kfa vh++FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ 
  Kaladp0630s0072.1.p  22 PCAACKLLRRRCSKDeCAFAPYFPAEDPVKFATVHRVFGASNVNKMLQDLPAQHRGDAVSSLVYEANARVRDPVYGCVGAISALQQQIHV 111
                          7***********9977************************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+lal+++e
  Kaladp0630s0072.1.p 112 LQAQLALTQAE 122
                          ******99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.81121123IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-4222120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKQERSAAAP LKKGVPAVVA TPCAACKLLR RRCSKDECAF APYFPAEDPV KFATVHRVFG  60
ASNVNKMLQD LPAQHRGDAV SSLVYEANAR VRDPVYGCVG AISALQQQIH VLQAQLALTQ  120
AEVLHLRSLS ASQAAAALRK TGDVITSPTA AVHHPHGSAL VPSSTSSLPA SKLAASDTAK  180
SSFLAADRSW W*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667079.14e-61PREDICTED: LOB domain-containing protein 4
RefseqXP_012452830.14e-61PREDICTED: LOB domain-containing protein 4 isoform X1
SwissprotQ9SA514e-56LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A124SHQ03e-62A0A124SHQ0_CYNCS; Lateral organ boundaries domain-containing protein
STRINGVIT_00s0125g00290.t016e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.12e-50ASYMMETRIC LEAVES 2-like 9