PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0515s0031.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 624aa    MW: 72559.9 Da    PI: 6.9322
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0515s0031.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.5e-2314101590
                 FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                          ++A+++GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke     ++w+v+++++ HnHel 
  Kaladp0515s0031.5.p  14 NFARKTGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHELL 101
                          59****************7777.******************************************998766789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2014101IPR004330FAR1 DNA binding domain
PfamPF105514.5E-23233325IPR018289MULE transposase domain
PROSITE profilePS509669.507504536IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7506532IPR007527Zinc finger, SWIM-type
SMARTSM005758.6E-4511538IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MKEMITQLLA HSFNFARKTG FSIRKARSTE SHNLGVYRRD YVCYRSGFNQ PRKKANVEHP  60
RERKSVRCGC DAKMYLTKEI VDGVAQWYVS QFSNIHNHEL LEDDQVRLLP AYRKIQEADQ  120
ERILLLSKAG FPVNRIVKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTIQ ENDTLLTEKR  180
ENDTLEFLEA CKAMAEKDFE FVYDYSTDEN GKVENIAWSY GQSVCAYTMF GDVVFFDTAY  240
HSITYGLLLG TWFGMDNHGK PILLGCVLLQ DETSRSFAWA FQSFHRFMRG RQPQTIVTDM  300
DTAIIHAVAN ELPNTKHVIC LWHIISKLSS WFTVPLGLHY GDFRSEFEAT CFLERIEEFE  360
HQWNHLVTQY ELGSDKHMVL LYTYREYWPF CYINNYFLAR MVTKEFLKSM STFLKKILSS  420
QSCLQGFFEE IATAVSIDYQ KNDDIQYTYI KTCMPVEEHA RSILTPYAFS VLQNELVLSM  480
QYEITDMPDG SYHLRHYKGL DKALVIRAEP IQCSCKAFDY SGILCRHCLR ILVLKNCFQL  540
PETYFLPRWR SDSNFYSVDN QNQQTGTDER VQAFHTLSTS LLSESIMTRE RFNYVRRELS  600
GLLENVRNMP AIIEAAVLGS LAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657467.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657468.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657469.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657470.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLF6HHP50.0F6HHP5_VITVI; Putative uncharacterized protein
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10