PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0515s0031.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 683aa    MW: 79379.3 Da    PI: 6.9496
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0515s0031.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.61e-2370160290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                           Y+++A+++GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke     ++w+v+++++ HnHe
  Kaladp0515s0031.4.p  70 HYSNFARKTGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHE 158
                          6********************7777.******************************************998766789************* PP

                 FAR1  89 la 90 
                          l 
  Kaladp0515s0031.4.p 159 LL 160
                          96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2170160IPR004330FAR1 DNA binding domain
PfamPF105515.1E-23292384IPR018289MULE transposase domain
PROSITE profilePS509669.507563595IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-7565591IPR007527Zinc finger, SWIM-type
SMARTSM005758.6E-4570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH TASGSQLVKM ETYSSQSSYA PSFTPYVGQI  60
YKTDTDAFQH YSNFARKTGF SIRKARSTES HNLGVYRRDY VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ FSNIHNHELL EDDQVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE  240
NDTLEFLEAC KAMAEKDFEF VYDYSTDENG KVENIAWSYG QSVCAYTMFG DVVFFDTAYH  300
SITYGLLLGT WFGMDNHGKP ILLGCVLLQD ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD  360
TAIIHAVANE LPNTKHVICL WHIISKLSSW FTVPLGLHYG DFRSEFEATC FLERIEEFEH  420
QWNHLVTQYE LGSDKHMVLL YTYREYWPFC YINNYFLARM VTKEFLKSMS TFLKKILSSQ  480
SCLQGFFEEI ATAVSIDYQK NDDIQYTYIK TCMPVEEHAR SILTPYAFSV LQNELVLSMQ  540
YEITDMPDGS YHLRHYKGLD KALVIRAEPI QCSCKAFDYS GILCRHCLRI LVLKNCFQLP  600
ETYFLPRWRS DSNFYSVDNQ NQQTGTDERV QAFHTLSTSL LSESIMTRER FNYVRRELSG  660
LLENVRNMPA IIEAAVLGSL AG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657470.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657469.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657468.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657467.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLF6HHP50.0F6HHP5_VITVI; Putative uncharacterized protein
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10