PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0515s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 713aa    MW: 82863.4 Da    PI: 6.9705
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0515s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-23100190290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                           Y+++A+++GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke     ++w+v+++++ HnHe
  Kaladp0515s0031.1.p 100 HYSNFARKTGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHE 188
                          6********************7777.******************************************998766789************* PP

                 FAR1  89 la 90 
                          l 
  Kaladp0515s0031.1.p 189 LL 190
                          96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-21100190IPR004330FAR1 DNA binding domain
PfamPF105515.4E-23322414IPR018289MULE transposase domain
PROSITE profilePS509669.507593625IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-7595621IPR007527Zinc finger, SWIM-type
SMARTSM005758.6E-4600627IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MMKSLTNHDV FCQSVPVFFL ELIFQKINAT MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH  60
TASGSQLVKM ETYSSQSSYA PSFTPYVGQI YKTDTDAFQH YSNFARKTGF SIRKARSTES  120
HNLGVYRRDY VCYRSGFNQP RKKANVEHPR ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ  180
FSNIHNHELL EDDQVRLLPA YRKIQEADQE RILLLSKAGF PVNRIVKVLE LEKGVQPGQL  240
PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE NDTLEFLEAC KAMAEKDFEF VYDYSTDENG  300
KVENIAWSYG QSVCAYTMFG DVVFFDTAYH SITYGLLLGT WFGMDNHGKP ILLGCVLLQD  360
ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD TAIIHAVANE LPNTKHVICL WHIISKLSSW  420
FTVPLGLHYG DFRSEFEATC FLERIEEFEH QWNHLVTQYE LGSDKHMVLL YTYREYWPFC  480
YINNYFLARM VTKEFLKSMS TFLKKILSSQ SCLQGFFEEI ATAVSIDYQK NDDIQYTYIK  540
TCMPVEEHAR SILTPYAFSV LQNELVLSMQ YEITDMPDGS YHLRHYKGLD KALVIRAEPI  600
QCSCKAFDYS GILCRHCLRI LVLKNCFQLP ETYFLPRWRS DSNFYSVDNQ NQQTGTDERV  660
QAFHTLSTSL LSESIMTRER FNYVRRELSG LLENVRNMPA IIEAAVLGSL AG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657467.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657468.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657469.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657470.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLF6HHP50.0F6HHP5_VITVI; Putative uncharacterized protein
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10