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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0515s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 713aa MW: 82863.4 Da PI: 6.9705 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.5 | 1.1e-23 | 100 | 190 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 Y+++A+++GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke ++w+v+++++ HnHe Kaladp0515s0031.1.p 100 HYSNFARKTGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHE 188 6********************7777.******************************************998766789************* PP FAR1 89 la 90 l Kaladp0515s0031.1.p 189 LL 190 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-21 | 100 | 190 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-23 | 322 | 414 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.507 | 593 | 625 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-7 | 595 | 621 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.6E-4 | 600 | 627 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MMKSLTNHDV FCQSVPVFFL ELIFQKINAT MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH 60 TASGSQLVKM ETYSSQSSYA PSFTPYVGQI YKTDTDAFQH YSNFARKTGF SIRKARSTES 120 HNLGVYRRDY VCYRSGFNQP RKKANVEHPR ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ 180 FSNIHNHELL EDDQVRLLPA YRKIQEADQE RILLLSKAGF PVNRIVKVLE LEKGVQPGQL 240 PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE NDTLEFLEAC KAMAEKDFEF VYDYSTDENG 300 KVENIAWSYG QSVCAYTMFG DVVFFDTAYH SITYGLLLGT WFGMDNHGKP ILLGCVLLQD 360 ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD TAIIHAVANE LPNTKHVICL WHIISKLSSW 420 FTVPLGLHYG DFRSEFEATC FLERIEEFEH QWNHLVTQYE LGSDKHMVLL YTYREYWPFC 480 YINNYFLARM VTKEFLKSMS TFLKKILSSQ SCLQGFFEEI ATAVSIDYQK NDDIQYTYIK 540 TCMPVEEHAR SILTPYAFSV LQNELVLSMQ YEITDMPDGS YHLRHYKGLD KALVIRAEPI 600 QCSCKAFDYS GILCRHCLRI LVLKNCFQLP ETYFLPRWRS DSNFYSVDNQ NQQTGTDERV 660 QAFHTLSTSL LSESIMTRER FNYVRRELSG LLENVRNMPA IIEAAVLGSL AG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657467.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_010657468.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_010657469.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_010657470.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | F6HHP5 | 0.0 | F6HHP5_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_12s0057g00960.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0515s0031.1.p |