PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0157.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 248aa    MW: 27069.3 Da    PI: 8.8355
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-40401411101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++Cv+apyf ++q +++fa+vhk+FGasnv+kll+++p ++r+d++ +++yeA+ar++dPvyG+v++il+lqqq++ 
  Kaladp0096s0157.1.p  40 PCGACKFLRRKCAAGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLQHIPVNRRQDTVVTVTYEAQARLSDPVYGCVSTILALQQQVAA 129
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l++el++++++l
  Kaladp0096s0157.1.p 130 LQTELSMVQSQL 141
                          *******99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33939141IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3940138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADPPGGRGR ETMSHRKGQS KRPDDEATGR IPAATPTTPP CGACKFLRRK CAAGCVFAPY  60
FGSDQGAARF AAVHKVFGAS NVSKLLQHIP VNRRQDTVVT VTYEAQARLS DPVYGCVSTI  120
LALQQQVAAL QTELSMVQSQ LINRKLAATN SLQTSQQQQL LGPQQQMSSM SSVMMQPAYS  180
NNSSSSNNNN DNNTLMNHLA SFNSNFGAAT CFQPLRLSRH QLQNEDDDEE KSPDAIIFTN  240
DIFHRRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271115.13e-80PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-69LBD20_ARATH; LOB domain-containing protein 20
TrEMBLF6HMP44e-80F6HMP4_VITVI; Putative uncharacterized protein
STRINGVIT_08s0056g01650.t011e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-53LOB domain-containing protein 20