PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0089.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 222aa    MW: 24093.5 Da    PI: 7.0897
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.2e-4071071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +
  Kaladp0089s0089.1.p   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLSHLPISDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVT 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+++la+l+++
  Kaladp0089s0089.1.p  97 LQSQLASLRHQ 107
                          *******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3476108IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-387105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLSHLPISD  60
RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVTLQSQ LASLRHQAAQ SLANGSSSII  120
GNTMNHQDTQ QSWYQSGLSH TLNQFTQQNN HLNFHHQNVQ FSQSNPMNVG NSSMGNSGNA  180
TLVNNTMNSF GSFEETSDQS FGSNNFDDDL QSVAFGYFQN S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263533.16e-85PREDICTED: LOB domain-containing protein 29
RefseqXP_012085857.15e-85PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J79e-71LBD29_ARATH; LOB domain-containing protein 29
SwissprotQ9SLB61e-70LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA5AIW92e-85A5AIW9_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03020.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.15e-61LBD family protein