PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0088.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 213aa    MW: 23491.5 Da    PI: 7.4692
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.2e-4081091101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +++ +++yeA+ar+rdPvyG+v++i++lqqq++ 
  Kaladp0089s0088.1.p   8 PCGACKFLRRKCTTDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVQDRCETVVTIAYEAQARLRDPVYGCVAHIFALQQQVAI 97 
                          7*************************99************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+a+l+++k++l
  Kaladp0089s0088.1.p  98 LQAQLVQVKAQL 109
                          *******99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8197109IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-388106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASGVGSPCG ACKFLRRKCT TDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVQ  60
DRCETVVTIA YEAQARLRDP VYGCVAHIFA LQQQVAILQA QLVQVKAQLA SNVMGNRNNA  120
TAHNMSNNNN TPSSEWPGLI YTLPNLQAYN NNHHHSVSPQ SSIESMEQNN GGVGDMKEET  180
LPYEIGSEQK KTRSYNDQLN ELQELAFRMM RD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235713.13e-85PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB78e-70LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM5VUH78e-85M5VUH7_PRUPE; Uncharacterized protein
STRINGGLYMA03G31830.11e-82(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-55lateral organ boundaries-domain 16